Transcript: LINC01082:3

Basic information

LNCipedia transcript ID: LINC01082:3 
HGNC Gene Symbol: LINC01082    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1082
Ensembl Gene ID: ENSG00000269186
Ensembl Transcript ID: ENST00000601250
RefSeq ID: NR_103859
Location (hg38): chr16:86196181-86199720
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 441 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000601250.1; NR_103859.1
Alternative gene names: ENSG00000269186.1; LINC01082; TCONS_00024492


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.4403 non-coding 
CPAT coding probability 5.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01082:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IRF8-4:5
4.0 LINC01082:3
4.1 LINC01082:3
5.0 LINC01082:3
5.1 LINC01082:3
5.2 LINC01082:3