Transcript: LINC01088:14

Basic information

LNCipedia transcript ID: LINC01088:14 
HGNC Gene Symbol: LINC01088    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1088
Ensembl Gene ID: ENSG00000249307
Ensembl Transcript ID: ENST00000511241
Location (hg38): chr4:79258781-79308654
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 679 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511241.1; RP11-438E5.1-007; OTTHUMT00000362878.1; NONHSAT097109; ENST00000511241.5
Alternative gene names: ENSG00000249307.1; RP11-438E5.1; OTTHUMG00000160858.4; LINC01088; ENSG00000249307.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.4041 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01088:14 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BMP2K-1:10
4.0 LINC01088:14
4.1 LINC01088:14
5.0 LINC01088:14
5.1 LINC01088:14
5.2 LINC01088:14