Transcript: LINC01089:26

Basic information

LNCipedia transcript ID: LINC01089:26 
LNCipedia gene ID: LINC01089
Location (hg38): chr12:121779608-121800677
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1219 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000546227.1; RP11-347I19.3-003; OTTHUMT00000402169.1; NONHSAT031442
Alternative gene names: ENSG00000256392.1; RP11-347I19.3; OTTHUMG00000169078.1; ; LIMT

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.75 non-coding 
CPAT coding probability 95.28% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01089:26 no no no no

Available literature

  1. Sas-Chen (2016), LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer., EMBO Mol Med
  2. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  3. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RHOF-1:15
4.0 LINC01089:26
4.1 LINC01089:26
5.0 LINC01089:26
5.1 LINC01089:26
5.2 LINC01089:26