Transcript: LINC01089:6

Basic information

LNCipedia transcript ID: LINC01089:6 
LNCipedia gene ID: LINC01089
Location (hg38): chr12:121793151-121803403
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 826 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000545544.1; RP11-347I19.3-001; OTTHUMT00000402171.1; NONHSAT031444
Alternative gene names: ENSG00000256392.1; RP11-347I19.3; OTTHUMG00000169078.1; ; LIMT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.6113 non-coding 
CPAT coding probability 7.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01089:6 yes no no no

Available literature

  1. Sas-Chen (2016), LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer., EMBO Mol Med
  2. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  3. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RHOF-1:3
4.0 LINC01089:6
4.1 LINC01089:6
5.0 LINC01089:6
5.1 LINC01089:6
5.2 LINC01089:6