Transcript: LINC01090:4

Basic information

LNCipedia transcript ID: LINC01090:4 
HGNC Gene Symbol: LINC01090    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1090
Ensembl Gene ID: ENSG00000231689
Ensembl Transcript ID: ENST00000415357
Location (hg38): chr2:188227820-188287634
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 881 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415357; ENST00000415357.1; AC068718.1-002; OTTHUMT00000334696.1; NONHSAT076028
Alternative gene names: ENSG00000231689; AC068718.1; ENSG00000231689.1; OTTHUMG00000154285.1; LINC01090; ENSG00000231689.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.1047 non-coding 
CPAT coding probability 12.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01090:4 no no no no

Available literature

  1. Guffanti (2013), Genome-wide association study implicates a novel RNA gene, the lincRNA AC068718.1, as a risk factor for post-traumatic stress disorder in women., Psychoneuroendocrinology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DIRC1-2:2
3.1 lnc-DIRC1-2:2
4.0 LINC01090:4
4.1 LINC01090:4
5.0 LINC01090:4
5.1 LINC01090:4
5.2 LINC01090:4