Transcript: LINC01097:3

Basic information

LNCipedia transcript ID: LINC01097:3 
HGNC Gene Symbol: LINC01097    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1097
Ensembl Gene ID: ENSG00000281202
Ensembl Transcript ID: ENST00000627163
RefSeq ID: NR_034054
Location (hg38): chr4:13526319-13531417
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2122 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000505835; NONHSAT095573; NR_034054; ENST00000627163.2; NR_034054.1
Alternative gene names: ENSG00000249512; AC006445.1; ENSG00000281202.2; LINC01097;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -206.1178 non-coding 
CPAT coding probability 58.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01097:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKX3-2-2:2
3.1 lnc-NKX3-2-2:2
4.0 LINC01097:3
4.1 LINC01097:3
5.0 LINC01097:3
5.1 LINC01097:3
5.2 LINC01097:3