Transcript: LINC01099:4

Basic information

LNCipedia transcript ID: LINC01099:4 
HGNC Gene Symbol: LINC01099    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1099
Ensembl Gene ID: ENSG00000251504
Ensembl Transcript ID: ENST00000507011
Location (hg38): chr4:177729638-177907862
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 512 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507011; ENST00000507011.1; RP11-162G9.1-001; OTTHUMT00000361923.1; NONHSAT099391
Alternative gene names: ENSG00000251504; RP11-162G9.1; ENSG00000251504.1; OTTHUMG00000160725.1; LINC01099;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.6669 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01099:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGA-2:3
3.1 lnc-AGA-3:3
4.0 LINC01099:4
4.1 LINC01099:4
5.0 LINC01099:4
5.1 LINC01099:4
5.2 LINC01099:4