Transcript: LINC01104:1

Basic information

LNCipedia transcript ID: LINC01104:1 
HGNC Gene Symbol: LINC01104    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1104
Ensembl Gene ID: ENSG00000232084
Ensembl Transcript ID: ENST00000452354
RefSeq ID: NR_103730
Location (hg38): chr2:100208254-100251484
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3115 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002715; ENST00000452354; ENST00000452354.1; AC104782.3-001; OTTHUMT00000329691.1; NONHSAT072771; NR_103730; ENST00000452354.5; NR_103730.1
Alternative gene names: XLOC_001589; linc-NMS-1; ENSG00000232084; AC104782.3; ENSG00000232084.1; OTTHUMG00000153132.1; LINC01104; ENSG00000232084.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.7603 non-coding 
CPAT coding probability 16.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01104:1 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NMS-1:1
3.1 lnc-NMS-1:1
4.0 LINC01104:1
4.1 LINC01104:1
5.0 LINC01104:1
5.1 LINC01104:1
5.2 LINC01104:1