Transcript: LINC01105:3

Basic information

LNCipedia transcript ID: LINC01105:3 
LNCipedia gene ID: LINC01105
RefSeq ID: NR_026832
Location (hg38): chr2:5932687-5980218
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 11868 bp
Exons: 2
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002637; NONHSAT068825; NR_026832; NR_026832.1
Alternative gene names: XLOC_001327; linc-RSAD2-2; FLJ30594; LOC150622; LINC01105


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.5245 non-coding 
CPAT coding probability 23.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01105:3 no no no no

Available literature

  1. Tang (2016), MEG3, HCN3 and linc01105 influence the proliferation and apoptosis of neuroblastoma cells via the HIF-1α and p53 pathways., Sci Rep
  2. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  3. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX11-2:2
3.1 lnc-SOX11-3:2
4.0 LINC01105:3
4.1 LINC01105:3
5.0 LINC01105:3
5.1 LINC01105:3
5.2 LINC01105:3