Transcript: LINC01105:5

Basic information

LNCipedia transcript ID: LINC01105:5 
HGNC Gene Symbol: LINC01105    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1105
Ensembl Gene ID: ENSG00000232044
Ensembl Transcript ID: ENST00000431188
Location (hg38): chr2:5932788-5984893
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3329 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002804; ENST00000431188; ENST00000431188.1; AC073479.1-001; OTTHUMT00000322749.1; NONHSAT068827
Alternative gene names: XLOC_001327; linc-RSAD2-2; ENSG00000232044; AC073479.1; ENSG00000232044.3; OTTHUMG00000151462.2; ENSG00000232044.4; LINC01105; ENSG00000232044.6; FLJ30594; LOC150622


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.3175 non-coding 
CPAT coding probability 3.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01105:5 no no no no

Available literature

  1. Tang (2016), MEG3, HCN3 and linc01105 influence the proliferation and apoptosis of neuroblastoma cells via the HIF-1α and p53 pathways., Sci Rep
  2. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  3. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX11-2:4
3.1 lnc-SOX11-3:4
4.0 LINC01105:5
4.1 LINC01105:5
5.0 LINC01105:5
5.1 LINC01105:5
5.2 LINC01105:5