Transcript: LINC01105:6

Basic information

LNCipedia transcript ID: LINC01105:6 
LNCipedia gene ID: LINC01105
Location (hg38): chr2:5932823-5982333
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 788 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004683; NONHSAT068828
Alternative gene names: XLOC_001327; linc-RSAD2-2; FLJ30594; LOC150622


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.3175 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01105:6 no no no no

Available literature

  1. Tang (2016), MEG3, HCN3 and linc01105 influence the proliferation and apoptosis of neuroblastoma cells via the HIF-1α and p53 pathways., Sci Rep
  2. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  3. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX11-2:5
3.1 lnc-SOX11-3:5
4.0 LINC01105:6
4.1 LINC01105:6
5.0 LINC01105:6
5.1 LINC01105:6
5.2 LINC01105:6