Transcript: LINC01107:2

Basic information

LNCipedia transcript ID: LINC01107:2 
HGNC Gene Symbol: LINC01107    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1107
Ensembl Gene ID: ENSG00000225493
Ensembl Transcript ID: ENST00000446979
Location (hg38): chr2:238510690-238555054
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1975 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002783; ENST00000446979; ENST00000446979.1; AC092619.1-001; OTTHUMT00000328258.1
Alternative gene names: XLOC_002537; linc-PER2-2; ENSG00000225493; AC092619.1; ENSG00000225493.1; OTTHUMG00000152849.1; LINC01107;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.6293 non-coding 
CPAT coding probability 9.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01107:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PER2-2:1
3.1 lnc-PER2-3:1
4.0 LINC01107:2
4.1 LINC01107:2
5.0 LINC01107:2
5.1 LINC01107:2
5.2 LINC01107:2