Transcript: LINC01114:5

Basic information

LNCipedia transcript ID: LINC01114:5 
HGNC Gene Symbol: LINC01114    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1114
Ensembl Gene ID: ENSG00000234177
Ensembl Transcript ID: ENST00000424321
Location (hg38): chr2:104746638-104755755
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2112 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002759; ENST00000424321; ENST00000424321.1; AC068057.2-002; OTTHUMT00000329333.1; NONHSAT072942; ENST00000424321.5
Alternative gene names: XLOC_002240; linc-MFSD9-14; ENSG00000234177; AC068057.2; ENSG00000234177.1; OTTHUMG00000153066.1; LINC01114; ENSG00000234177.5; PANCAT; LOC284998


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.791 non-coding 
CPAT coding probability 34.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01114:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TGFBRAP1-6:4
3.1 lnc-TGFBRAP1-7:4
4.0 LINC01114:5
4.1 LINC01114:5
5.0 LINC01114:5
5.1 LINC01114:5
5.2 LINC01114:5