Transcript: LINC01115:6

Basic information

LNCipedia transcript ID: LINC01115:6 
HGNC Gene Symbol: LINC01115    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1115
Ensembl Gene ID: ENSG00000237667
Ensembl Transcript ID: ENST00000415700
Location (hg38): chr2:780351-868191
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 536 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415700; ENST00000415700.1; AC113607.1-002; OTTHUMT00000322404.1
Alternative gene names: ENSG00000237667; AC113607.1; ENSG00000237667.1; OTTHUMG00000151368.1; LINC01115; ENSG00000237667.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.2856 non-coding 
CPAT coding probability 39.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01115:6 no no no no

Available literature

  1. De (2015), Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity., BioData Min


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM18-9:4
3.1 lnc-TMEM18-9:3
4.0 LINC01115:6
4.1 LINC01115:6
5.0 LINC01115:6
5.1 LINC01115:6
5.2 LINC01115:6