Transcript: LINC01116:16

Basic information

LNCipedia transcript ID: LINC01116:16 
LNCipedia gene ID: LINC01116
Location (hg38): chr2:176611020-176637609
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7225 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000163364.5|MICT00000203475.1
Alternative gene names: TALNEC2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
NRNANLPAR 90.9090909090909% sense-1
Lee translation initiation sites non-coding 
PhyloCSF score 24.0081 non-coding 
CPAT coding probability 5.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01116:16 no no no no

Available literature

  1. Beaver (2017), Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer., J. Nutr. Biochem.
  2. Brodie (2017), The novel long non-coding RNA TALNEC2, regulates tumor cell growth and the stemness and radiation response of glioma stem cells., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01116:16
5.0 LINC01116:16
5.1 LINC01116:16
5.2 LINC01116:16