Transcript: LINC01116:6

Basic information

LNCipedia transcript ID: LINC01116:6 
LNCipedia gene ID: LINC01116
RefSeq ID: NR_040001
Location (hg38): chr2:176629581-176637574
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1058 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_040001; NR_040001.2
Alternative gene names: ; TALNEC2; LINC01116


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
NRNANLPAR 90.9090909090909% sense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.2797 non-coding 
CPAT coding probability 3.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01116:6 no no no no

Available literature

  1. Beaver (2017), Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer., J. Nutr. Biochem.
  2. Brodie (2017), The novel long non-coding RNA TALNEC2, regulates tumor cell growth and the stemness and radiation response of glioma stem cells., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC009336.1-5:7
4.0 LINC01116:6
4.1 LINC01116:6
5.0 LINC01116:6
5.1 LINC01116:6
5.2 LINC01116:6