Transcript: LINC01116:7

Basic information

LNCipedia transcript ID: LINC01116:7 
HGNC Gene Symbol: LINC01116    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1116
Ensembl Gene ID: ENSG00000163364
Ensembl Transcript ID: ENST00000339037
Location (hg38): chr2:176630165-176637562
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 838 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003451; ENST00000339037; ENST00000339037.3; AC017048.3-002; OTTHUMT00000334154.1; NONHSAT075662
Alternative gene names: XLOC_002408; linc-EVX2-8; ENSG00000163364; AC017048.3; ENSG00000163364.4; OTTHUMG00000154156.1; ENSG00000163364.5; LINC01116; ENSG00000163364.9; ; TALNEC2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -343.0072 non-coding 
CPAT coding probability 3.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01116:7 no no no no

Available literature

  1. Beaver (2017), Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer., J. Nutr. Biochem.
  2. Brodie (2017), The novel long non-coding RNA TALNEC2, regulates tumor cell growth and the stemness and radiation response of glioma stem cells., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC009336.1-5:4
3.1 lnc-AC009336.1-5:4
4.0 LINC01116:7
4.1 LINC01116:7
5.0 LINC01116:7
5.1 LINC01116:7
5.2 LINC01116:7