Transcript: LINC01117:2

Basic information

LNCipedia transcript ID: LINC01117:2 
HGNC Gene Symbol: LINC01117    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1117
Ensembl Gene ID: ENSG00000224577
Ensembl Transcript ID: ENST00000443670
Location (hg38): chr2:176637710-176655958
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 699 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003057; ENST00000443670; ENST00000443670.1; AC017048.4-001; OTTHUMT00000334155.1; NONHSAT075664
Alternative gene names: XLOC_001765; linc-HNRNPA3-4; ENSG00000224577; AC017048.4; ENSG00000224577.1; OTTHUMG00000154157.1; LINC01117;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.4969 non-coding 
CPAT coding probability 8.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01117:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTX2-1:1
3.1 lnc-MTX2-1:1
4.0 LINC01117:2
4.1 LINC01117:2
5.0 LINC01117:2
5.1 LINC01117:2
5.2 LINC01117:2