Transcript: LINC01120:1

Basic information

LNCipedia transcript ID: LINC01120:1 
LNCipedia gene ID: LINC01120
Location (hg38): chr2:131398977-131404704
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 6
Sources: Nielsen et al.,2014
Alternative transcript names: l_1951_chr2:132156549-132162277_adipose
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.5312 non-coding 
CPAT coding probability 8.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01120:1 no no no no

Available literature

  1. Durinck (2014), The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia., Haematologica
  2. Idogawa (2014), Identification and analysis of large intergenic non-coding RNAs regulated by p53 family members through a genome-wide analysis of p53-binding sites., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLEKHB2-1:6
4.0 LINC01120:1
4.1 LINC01120:1
5.0 LINC01120:1
5.1 LINC01120:1
5.2 LINC01120:1