Transcript: LINC01120:5

Basic information

LNCipedia transcript ID: LINC01120:5 
HGNC Gene Symbol: LINC01120    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1120
Ensembl Gene ID: ENSG00000223631
Ensembl Transcript ID: ENST00000437751
Location (hg38): chr2:131402901-131409049
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1861 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437751; ENST00000437751.1; AC073869.19-001; OTTHUMT00000331804.1; NONHSAT074454
Alternative gene names: ENSG00000223631; AC073869.19; ENSG00000223631.1; OTTHUMG00000153602.1; LINC01120;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.9687 non-coding 
CPAT coding probability 20.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01120:5 no no no no

Available literature

  1. Durinck (2014), The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia., Haematologica
  2. Idogawa (2014), Identification and analysis of large intergenic non-coding RNAs regulated by p53 family members through a genome-wide analysis of p53-binding sites., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLEKHB2-1:4
3.1 lnc-PLEKHB2-1:2
4.0 LINC01120:5
4.1 LINC01120:5
5.0 LINC01120:5
5.1 LINC01120:5
5.2 LINC01120:5