Transcript: LINC01121:2

Basic information

LNCipedia transcript ID: LINC01121:2 
HGNC Gene Symbol: LINC01121    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1121
Ensembl Gene ID: ENSG00000205054
Ensembl Transcript ID: ENST00000430650
Location (hg38): chr2:45192179-45323295
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 721 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003275; ENST00000430650; ENST00000430650.1; AC009236.1-004; OTTHUMT00000326239.1; NONHSAT070455
Alternative gene names: XLOC_002078; linc-SIX2-2; ENSG00000205054; AC009236.1; ENSG00000205054.2; OTTHUMG00000152484.1; LINC01121; ENSG00000205054.6; UNQ6975


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.1574 non-coding 
CPAT coding probability 4.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01121:2 no no no no

Available literature

  1. Qian (2018), LINC01121 Inhibits Cell Apoptosis While Facilitating Proliferation, Migration, and Invasion Though Negative Regulation of the Camp/PKA Signaling Pathway via GLP1R., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SRBD1-3:2
3.1 lnc-SRBD1-4:2
4.0 LINC01121:2
4.1 LINC01121:2
5.0 LINC01121:2
5.1 LINC01121:2
5.2 LINC01121:2