Transcript: LINC01123:5

Basic information

LNCipedia transcript ID: LINC01123:5 
HGNC Gene Symbol: LINC01123    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1123
Ensembl Gene ID: ENSG00000204588
Ensembl Transcript ID: ENST00000419296
Location (hg38): chr2:109987063-109995281
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2436 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419296; ENST00000419296.1; AC013268.5-003; OTTHUMT00000337869.1
Alternative gene names: ENSG00000204588; AC013268.5; ENSG00000204588.5; OTTHUMG00000154954.2; LINC01123;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 54.6211 non-coding 
CPAT coding probability 12.40% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.210526316
seqAAMNMCLVSFFLELNVLQQWPHA
orfFrame6.204431409

In stringent set: no

Locus conservation

Locus conservation?
LINC01123:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LIMS3-1:1
3.1 lnc-LIMS3-1:1
4.0 LINC01123:5
4.1 LINC01123:5
5.0 LINC01123:5
5.1 LINC01123:5
5.2 LINC01123:5