Transcript: LINC01127:21

Basic information

LNCipedia transcript ID: LINC01127:21 
HGNC Gene Symbol: LINC01127    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1127
Ensembl Gene ID: ENSG00000281162
Ensembl Transcript ID: ENST00000627215
Location (hg38): chr2:101962056-101987167
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3727 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508786; NONHSAT072836; ENST00000627215.1
Alternative gene names: ENSG00000250054; AC005035.2; ENSG00000281162.2; LINC01127; AC005035.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.4067 non-coding 
CPAT coding probability 6.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01127:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL1R2-2:1
3.1 lnc-IL1R2-2:1
4.0 lnc-IL1R2-2:1
4.1 lnc-IL1R2-2:1
5.0 lnc-IL1R2-2:1
5.1 LINC01127:2
5.2 LINC01127:21