Transcript: LINC01135:2

Basic information

LNCipedia transcript ID: LINC01135:2 
LNCipedia gene ID: LINC01135
RefSeq ID: NR_034015
Location (hg38): chr1:58785151-58899712
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 994 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000544621; ENST00000544621.1; RP4-794H19.2-201; NONHSAT003523; NR_034015; NR_034015.1
Alternative gene names: ENSG00000234807; RP4-794H19.2; ENSG00000234807.3; OTTHUMG00000008377.1; ENSG00000234807.4; LINC01135;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.2487 non-coding 
CPAT coding probability 38.98% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01135:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGGY-5:1
3.1 lnc-FGGY-5:1
4.0 LINC01135:2
4.1 LINC01135:2
5.0 LINC01135:2
5.1 LINC01135:2
5.2 LINC01135:2