Transcript: LINC01135:5

Basic information

LNCipedia transcript ID: LINC01135:5 
LNCipedia gene ID: LINC01135
Location (hg38): chr1:58785160-58900996
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2273 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000419531; ENST00000419531.1; RP4-794H19.2-001; OTTHUMT00000023043.1; NONHSAT003526
Alternative gene names: ENSG00000234807; RP4-794H19.2; ENSG00000234807.3; OTTHUMG00000008377.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.6352 non-coding 
CPAT coding probability 15.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01135:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGGY-5:2
3.1 lnc-FGGY-5:2
4.0 LINC01135:5
4.1 LINC01135:5
5.0 LINC01135:5
5.1 LINC01135:5
5.2 LINC01135:5