Transcript: LINC01136:3

Basic information

LNCipedia transcript ID: LINC01136:3 
HGNC Gene Symbol: LINC01136    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1136
Ensembl Gene ID: ENSG00000233791
Ensembl Transcript ID: ENST00000457348
Location (hg38): chr1:203298758-203305309
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2539 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457348; ENST00000457348.1; RP11-134P9.1-001; OTTHUMT00000087170.1; ENST00000457348.5
Alternative gene names: ENSG00000233791; RP11-134P9.1; ENSG00000233791.1; OTTHUMG00000035835.2; LINC01136; ENSG00000233791.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.7905 non-coding 
CPAT coding probability 2.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01136:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHIT1-1:1
3.1 lnc-CHIT1-1:1
4.0 LINC01136:3
4.1 LINC01136:3
5.0 LINC01136:3
5.1 LINC01136:3
5.2 LINC01136:3