Transcript: LINC01138:39

Basic information

LNCipedia transcript ID: LINC01138:39 
LNCipedia gene ID: LINC01138
Location (hg38): chr1:148362994-148379345
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 503 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000440199; ENST00000440199.1; BX284650.1-002; OTTHUMT00000037957.1; NONHSAT005737
Alternative gene names: ENSG00000223804; BX284650.1; ENSG00000223804.1; OTTHUMG00000013625.1; RP6-206I17.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.0857 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01138:39 no no no no

Available literature

  1. Wan (2016), Identification of androgen-responsive lncRNAs as diagnostic and prognostic markers for prostate cancer., Oncotarget
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPIAL4G-2:5
3.1 lnc-PPIAL4G-2:5
4.0 lnc-PPIAL4G-2:5
4.1 lnc-PPIAL4G-2:5
5.0 lnc-PPIAL4G-2:5
5.1 LINC01138:29
5.2 LINC01138:39