Transcript: LINC01138:41

Basic information

LNCipedia transcript ID: LINC01138:41 
HGNC Gene Symbol: LINC01138    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1138
Ensembl Gene ID: ENSG00000274020
Ensembl Transcript ID: ENST00000434245
Location (hg38): chr1:148290890-148297271
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1140 bp
Exons: 6
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434245.3
Alternative gene names: ENSG00000231196.4; RP11-495P10.7; ENSG00000274020.2; LINC01138


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 28.5054 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01138:41 no no no no

Available literature

  1. Wan (2016), Identification of androgen-responsive lncRNAs as diagnostic and prognostic markers for prostate cancer., Oncotarget
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NBPF24-4:7
4.1 lnc-NBPF24-4:7
5.0 lnc-NBPF24-4:7
5.1 LINC01138:31
5.2 LINC01138:41