Transcript: LINC01139:3

Basic information

LNCipedia transcript ID: LINC01139:3 
LNCipedia gene ID: LINC01139
RefSeq ID: NR_015407
Location (hg38): chr1:238480384-238486017
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1531 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_015407; NR_015407.1
Alternative gene names: ; LINK-A; LINC01139


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.1321 non-coding 
CPAT coding probability 29.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01139:3 no no no no

Available literature

  1. Lin (2017), The LINK-A lncRNA interacts with PtdIns(3,4,5)P<sub>3</sub> to hyperactivate AKT and confer resistance to AKT inhibitors., Nat. Cell Biol.
  2. Liu (2016), Comprehensive transcriptome analysis identifies novel molecular subtypes and subtype-specific RNAs of triple-negative breast cancer., Breast Cancer Res.
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZP4-1:3
4.0 LINC01139:3
4.1 LINC01139:3
5.0 LINC01139:3
5.1 LINC01139:3
5.2 LINC01139:3