Transcript: LINC01142:4

Basic information

LNCipedia transcript ID: LINC01142:4 
HGNC Gene Symbol: LINC01142    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1142
Ensembl Gene ID: ENSG00000224286
Ensembl Transcript ID: ENST00000440404
Location (hg38): chr1:170271603-170278932
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1457 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000676; ENST00000440404; ENST00000440404.1; RP11-297H3.4-001; OTTHUMT00000087599.1; NONHSAT139914; ENST00000440404.5
Alternative gene names: XLOC_001087; linc-KIFAP3-2; ENSG00000224286; RP11-297H3.4; ENSG00000224286.1; OTTHUMG00000035969.1; LINC01142; ENSG00000224286.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.5688 non-coding 
CPAT coding probability 25.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01142:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIFAP3-1:3
3.1 lnc-KIFAP3-1:3
4.0 LINC01142:4
4.1 LINC01142:4
5.0 LINC01142:4
5.1 LINC01142:4
5.2 LINC01142:4