Transcript: LINC01149:2

Basic information

LNCipedia transcript ID: LINC01149:2 
HGNC Gene Symbol: LINC01149    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1149
Ensembl Gene ID: ENSG00000230174
Ensembl Transcript ID: ENST00000430364
Location (hg38): chr6:31441667-31446973
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2141 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011289; ENST00000430364; ENST00000430364.1; XXbac-BPG181B23.4-001; OTTHUMT00000258150.1; NONHSAT108771
Alternative gene names: XLOC_005246; linc-HCP5; ENSG00000230174; XXbac-BPG181B23.4; ENSG00000230174.1; OTTHUMG00000133747.1; LINC01149


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.3829 non-coding 
CPAT coding probability 5.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01149:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MICA-1:1
3.1 lnc-MICA-4:1
4.0 LINC01149:2
4.1 LINC01149:2
5.0 LINC01149:2
5.1 LINC01149:2
5.2 LINC01149:2