Transcript: LINC01152:1

Basic information

LNCipedia transcript ID: LINC01152:1 
HGNC Gene Symbol: LINC01152    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1152
Ensembl Gene ID: ENSG00000256124
Ensembl Transcript ID: ENST00000538693
Location (hg38): chr17:72030291-72036316
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 639 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538693; ENST00000538693.1; RP11-84E24.3-001; OTTHUMT00000397673.1; NONHSAT055640
Alternative gene names: ENSG00000256124; RP11-84E24.3; ENSG00000256124.1; OTTHUMG00000168039.1; LINC01152; ENSG00000256124.5; TCONS_00025128; CMPD


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.866 non-coding 
CPAT coding probability 28.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01152:1 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Ninomiya (1996), Isolation of a testis-specific cDNA on chromosome 17q from a region adjacent to the breakpoint of t(12;17) observed in a patient with acampomelic campomelic dysplasia and sex reversal., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX9-2:1
3.1 lnc-SOX9-2:1
4.0 LINC01152:1
4.1 LINC01152:1
5.0 LINC01152:1
5.1 LINC01152:1
5.2 LINC01152:1