Transcript: LINC01154:8

Basic information

LNCipedia transcript ID: LINC01154:8 
HGNC Gene Symbol: LINC01154    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1154
Ensembl Gene ID: ENSG00000257477
Ensembl Transcript ID: ENST00000548617
Location (hg38): chr12:54428303-54429403
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548617.1; RP11-753H16.4-001; OTTHUMT00000406600.1; NONHSAT028630
Alternative gene names: ENSG00000257477.1; RP11-753H16.4; OTTHUMG00000169932.1; LINC01154;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.287 non-coding 
CPAT coding probability 10.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01154:8 no no no no

Available literature

  1. Nielsen (2014), Identification of expressed and conserved human noncoding RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NCKAP1L-1:4
4.0 LINC01154:8
4.1 LINC01154:8
5.0 LINC01154:8
5.1 LINC01154:8
5.2 LINC01154:8