Transcript: LINC01154:9

Basic information

LNCipedia transcript ID: LINC01154:9 
LNCipedia gene ID: LINC01154
Location (hg38): chr12:54429326-54437115
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 370 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020439; NONHSAT028631
Alternative gene names: XLOC_009769; linc-NCKAP1L-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -334.1562 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01154:9 no no no no

Available literature

  1. Nielsen (2014), Identification of expressed and conserved human noncoding RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCKAP1L-1:4
3.1 lnc-NCKAP1L-1:5
4.0 LINC01154:9
4.1 LINC01154:9
5.0 LINC01154:9
5.1 LINC01154:9
5.2 LINC01154:9