Transcript: LINC01159:3

Basic information

LNCipedia transcript ID: LINC01159:3 
HGNC Gene Symbol: LINC01159    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1159
Ensembl Gene ID: ENSG00000229743
Ensembl Transcript ID: ENST00000434764
Location (hg38): chr2:104869846-104872595
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434764; ENST00000434764.1; AC018730.3-002; OTTHUMT00000329326.1
Alternative gene names: ENSG00000229743; AC018730.3; ENSG00000229743.2; OTTHUMG00000153064.1; LINC01159; linc-Brn1b


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.7409 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01159:3 no no no no

Available literature

  1. Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TGFBRAP1-4:1
3.1 lnc-TGFBRAP1-5:1
4.0 LINC01159:3
4.1 LINC01159:3
5.0 LINC01159:3
5.1 LINC01159:3
5.2 LINC01159:3