Transcript: LINC01160:2

Basic information

LNCipedia transcript ID: LINC01160:2 
HGNC Gene Symbol: LINC01160    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1160
Ensembl Gene ID: ENSG00000231346
Ensembl Transcript ID: ENST00000441004
Location (hg38): chr1:111599865-111608324
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 768 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441004; ENST00000441004.1; RP5-836N10.1-001; OTTHUMT00000033068.1; ENST00000441004.5
Alternative gene names: ENSG00000231346; RP5-836N10.1; ENSG00000231346.1; OTTHUMG00000011958.1; LINC01160; ENSG00000231346.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 76.408 coding 
CPAT coding probability 34.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01160:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADORA3-1:2
3.1 lnc-ADORA3-1:2
4.0 LINC01160:2
4.1 LINC01160:2
5.0 LINC01160:2
5.1 LINC01160:2
5.2 LINC01160:2