Transcript: LINC01166:3

Basic information

LNCipedia transcript ID: LINC01166:3 
HGNC Gene Symbol: LINC01166    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1166
Ensembl Gene ID: ENSG00000232903
Ensembl Transcript ID: ENST00000443633
RefSeq ID: NR_120627
Location (hg38): chr10:132943967-132965289
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2619 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00018073; ENST00000443633.1; RP13-137A17.4-001; OTTHUMT00000051102.1; NONHSAT017096; NR_120627; NR_120627.1
Alternative gene names: XLOC_009005; linc-C10orf93-3; ENSG00000232903.2; RP13-137A17.4; OTTHUMG00000019299.1; LINC01166;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.8215 non-coding 
CPAT coding probability 7.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01166:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC40-2:2
3.1 lnc-TTC40-2:2
4.0 LINC01166:3
4.1 LINC01166:3
5.0 LINC01166:3
5.1 LINC01166:3
5.2 LINC01166:3