Transcript: LINC01167:1

Basic information

LNCipedia transcript ID: LINC01167:1 
HGNC Gene Symbol: LINC01167    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1167
Ensembl Gene ID: ENSG00000224758
Ensembl Transcript ID: ENST00000423232
RefSeq ID: NR_125763
Location (hg38): chr10:132961340-132962237
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 604 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00018075; ENST00000423232; ENST00000423232.1; RP13-137A17.5-001; OTTHUMT00000051103.1; NONHSAT017099; NR_125763; NR_125763.1
Alternative gene names: XLOC_009006; linc-C10orf93-2; ENSG00000224758; RP13-137A17.5; ENSG00000224758.1; OTTHUMG00000019300.1; LINC01167; TCONS_00018075


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.4595 non-coding 
CPAT coding probability 6.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01167:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC40-1:1
3.1 lnc-TTC40-1:1
4.0 LINC01167:1
4.1 LINC01167:1
5.0 LINC01167:1
5.1 LINC01167:1
5.2 LINC01167:1