Transcript: LINC01168:1

Basic information

LNCipedia transcript ID: LINC01168:1 
LNCipedia gene ID: LINC01168
Location (hg38): chr10:132965534-132976354
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5255 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000461291; TCONS_00017893; ENST00000461291.1; RP13-137A17.6-001; OTTHUMT00000349546.1; NONHSAT017102
Alternative gene names: ENSG00000240707; XLOC_008677; linc-GPR123-3; RP13-137A17.6; ENSG00000240707.1; OTTHUMG00000157745.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.6278 non-coding 
CPAT coding probability 91.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01168:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR123-3:1
3.1 lnc-GPR123-3:1
4.0 LINC01168:1
4.1 LINC01168:1
5.0 LINC01168:1
5.1 LINC01168:1
5.2 LINC01168:1