Transcript: LINC01168:2

Basic information

LNCipedia transcript ID: LINC01168:2 
HGNC Gene Symbol: LINC01168    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1168
Ensembl Gene ID: ENSG00000240707
Ensembl Transcript ID: ENST00000461291
Location (hg38): chr10:132965534-132976354
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5254 bp
Exons: 3
Sources: Broad Institute; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017724; ENST00000461291.2
Alternative gene names: XLOC_008677; linc-GPR123-3; ENSG00000240707.2; LINC01168;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.6278 non-coding 
CPAT coding probability 91.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01168:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR123-3:2
3.1 lnc-GPR123-3:2
4.0 LINC01168:2
4.1 LINC01168:2
5.0 LINC01168:2
5.1 LINC01168:2
5.2 LINC01168:2