Transcript: LINC01170:6

Basic information

LNCipedia transcript ID: LINC01170:6 
LNCipedia gene ID: LINC01170
Location (hg38): chr5:124306230-124386255
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 262 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000520192; ENST00000520192.1; RP11-93O7.5-001; OTTHUMT00000374575.1; NONHSAT103515
Alternative gene names: ENSG00000253807; RP11-93O7.5; ENSG00000253807.1; OTTHUMG00000163624.1; LINC01170;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.5534 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01170:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF608-7:2
3.1 lnc-ZNF608-7:2
4.0 LINC01170:6
4.1 LINC01170:6
5.0 LINC01170:6
5.1 LINC01170:6
5.2 LINC01170:6