Transcript: LINC01176:12

Basic information

LNCipedia transcript ID: LINC01176:12 
LNCipedia gene ID: LINC01176
Location (hg38): chr7:30389346-30404581
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2289 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013403; NONHSAT119865
Alternative gene names: XLOC_006035; linc-GARS-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.007 non-coding 
CPAT coding probability 36.67% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01176:12 no no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GARS-2:1
3.1 lnc-GARS-4:2
4.0 lnc-ZNRF2-4:3
4.1 lnc-ZNRF2-4:3
5.0 lnc-ZNRF2-4:3
5.1 LINC01176:3
5.2 LINC01176:12