Transcript: LINC01177:1

Basic information

LNCipedia transcript ID: LINC01177:1 
HGNC Gene Symbol: LINC01177    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1177
Ensembl Gene ID: ENSG00000261397
Ensembl Transcript ID: ENST00000568030
RefSeq ID: NR_126397
Location (hg38): chr16:9441294-9444985
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 536 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000568030.1; RP11-243A14.2-001; OTTHUMT00000435113.1; NONHSAT140462; NR_126397; NR_126397.1
Alternative gene names: ENSG00000261397.1; RP11-243A14.2; OTTHUMG00000177056.1; LINC01177;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.3482 non-coding 
CPAT coding probability 12.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01177:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-297M9.1.1-2:1
4.0 LINC01177:1
4.1 LINC01177:1
5.0 LINC01177:1
5.1 LINC01177:1
5.2 LINC01177:1