Transcript: LINC01179:1

Basic information

LNCipedia transcript ID: LINC01179:1 
HGNC Gene Symbol: LINC01179    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1179
Ensembl Gene ID: ENSG00000249500
Ensembl Transcript ID: ENST00000507838
RefSeq ID: NR_121676
Location (hg38): chr4:165684639-165762778
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2163 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007677; ENST00000507838; ENST00000507838.1; RP11-340B18.1-001; OTTHUMT00000363773.1; NONHSAT099110; NR_121676; NR_121676.1
Alternative gene names: XLOC_003770; linc-TLL1-1; ENSG00000249500; RP11-340B18.1; ENSG00000249500.1; OTTHUMG00000161098.1; LINC01179;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.1046 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01179:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TLL1-1:1
3.1 lnc-TLL1-1:1
4.0 LINC01179:1
4.1 LINC01179:1
5.0 LINC01179:1
5.1 LINC01179:1
5.2 LINC01179:1