Transcript: LINC01185:2

Basic information

LNCipedia transcript ID: LINC01185:2 
HGNC Gene Symbol: LINC01185    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1185
Ensembl Gene ID: ENSG00000228414
Ensembl Transcript ID: ENST00000452343
RefSeq ID: NR_033980
Location (hg38): chr2:60847760-60881314
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1705 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000452343; ENST00000452343.1; AC010733.4-001; OTTHUMT00000325348.1; NONHSAT070912; NR_033980; NR_033980.1
Alternative gene names: ENSG00000228414; AC010733.4; ENSG00000228414.2; OTTHUMG00000152126.3; ENSG00000228414.6; LINC01185; FLJ16341


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.588 non-coding 
CPAT coding probability 14.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01185:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PUS10-1:1
3.1 lnc-PUS10-1:2
4.0 LINC01185:2
4.1 LINC01185:2
5.0 LINC01185:2
5.1 LINC01185:2
5.2 LINC01185:2