Transcript: LINC01187:1

Basic information

LNCipedia transcript ID: LINC01187:1 
LNCipedia gene ID: LINC01187
Location (hg38): chr5:170188314-170199144
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4587 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT105034
Alternative gene names: KIDR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.239 non-coding 
CPAT coding probability 2.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01187:1 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LCP2-2:7
4.0 LINC01187:1
4.1 LINC01187:1
5.0 LINC01187:1
5.1 LINC01187:1
5.2 LINC01187:1