Transcript: LINC01187:2

Basic information

LNCipedia transcript ID: LINC01187:2 
LNCipedia gene ID: LINC01187
Location (hg38): chr5:170191647-170199141
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2251 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009811; NONHSAT105036
Alternative gene names: XLOC_005077; linc-FAM196B; KIDR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.7272 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01187:2 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LCP2-2:1
3.1 lnc-LCP2-2:1
4.0 LINC01187:2
4.1 LINC01187:2
5.0 LINC01187:2
5.1 LINC01187:2
5.2 LINC01187:2