Transcript: LINC01187:3

Basic information

LNCipedia transcript ID: LINC01187:3 
HGNC Gene Symbol: LINC01187    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1187
Ensembl Gene ID: ENSG00000249601
Ensembl Transcript ID: ENST00000506431
Location (hg38): chr5:170191579-170199141
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2314 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506431; ENST00000506431.2; CTB-27N1.1-001; OTTHUMT00000371655.1
Alternative gene names: ENSG00000249601; CTB-27N1.1; ENSG00000249601.2; OTTHUMG00000163086.1; LINC01187; KIDR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.7272 non-coding 
CPAT coding probability 3.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01187:3 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LCP2-2:2
3.1 lnc-LCP2-2:2
4.0 LINC01187:3
4.1 LINC01187:3
5.0 LINC01187:3
5.1 LINC01187:3
5.2 LINC01187:3