Transcript: LINC01191:7

Basic information

LNCipedia transcript ID: LINC01191:7 
LNCipedia gene ID: LINC01191
Ensembl Gene ID: ENSG00000243179
Ensembl Transcript ID: ENST00000420161
Location (hg38): chr2:113979909-113983258
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 815 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420161; ENST00000420161.1; AC110769.3-001; OTTHUMT00000331503.1
Alternative gene names: ENSG00000243179; AC110769.3; ENSG00000243179.1; OTTHUMG00000153531.1; VIN; lnc-ACTR3; AC110769.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.9359 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01191:7 no no no no

Available literature

  1. Winterling (2014), Evidence for a crucial role of a host non-coding RNA in influenza A virus replication., RNA Biol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACTR3-1:3
3.1 lnc-ACTR3-1:3
4.0 LINC01191:7
4.1 LINC01191:7
5.0 LINC01191:7
5.1 LINC01191:7
5.2 LINC01191:7