Transcript: LINC01193:3

Basic information

LNCipedia transcript ID: LINC01193:3 
LNCipedia gene ID: LINC01193
RefSeq ID: NR_040094
Location (hg38): chr15:20940438-20993304
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3402 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT040674; NR_040094; NR_040094.1
Alternative gene names: LOC348120; LINC01193


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 80.2976 coding 
CPAT coding probability 12.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01193:3 no no no no

Available literature

  1. Chen (2005), Identification of cancer/testis-antigen genes by massively parallel signature sequencing., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4M2-3:7
4.0 LINC01193:3
4.1 LINC01193:3
5.0 LINC01193:3
5.1 LINC01193:3
5.2 LINC01193:3